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plasmid backbone  (Addgene inc)


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    Structured Review

    Addgene inc plasmid backbone
    Plasmid Backbone, supplied by Addgene inc, used in various techniques. Bioz Stars score: 95/100, based on 241 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sgrna+cloning/sgRNA(MS2)+cloning+backbone+(Plasmid+%2361424)/pm41833778-84-8-16
    Average 95 stars, based on 241 article reviews
    plasmid backbone - by Bioz Stars, 2026-09
    95/100 stars

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    Related Articles

    Cloning:

    Article Title: Chronic lysosome damage boosts interferon responses to Palbociclib through a mitochondrial signalling axis
    Article Snippet: .. Where Gateway cloning was performed this was as per standard protocols using BP clonase II and LR clonase II (Invitrogen). sgRNA cloning into lentiGuide-puro vector was performed using restriction digestion as per the standard protocols available from Addgene. ..

    Article Title: Detecting Methylation Changes Induced by Prime Editing
    Article Snippet: .. Backbone plasmids used for pegRNA and sgRNA cloning are available from Addgene. ..

    Article Title: Med12 cooperates with multiple differentiation signals to facilitate efficient lineage transitions in embryonic stem cells.
    Article Snippet: .. Cell lines carrying PiggyBac transgenes were kept under appropriate selection to prevent transgene repression over passaging. sgRNA cloning and generation of single-gene mutants For mutagenesis of individual genes via CRISPR/Cas9, gene targeting sgRNAs (Table S7) were cloned into pX459 (Addgene plasmid #48139) using BbsI (NEB) overhangs following Ran et al., 2013 (Ran et al., 2013). ..

    Article Title: Residual Breast Cancer Cells Co-opt SOX5-driven Endochondral Ossification to Maintain Dormancy
    Article Snippet: LentiV_Cas9_puro (Addgene, Cat. #108100) was utilized to create Cas9-expressing MTB/TAN -derived primary tumor cells. .. For CRISPR-Cas9 studies, sgRNA cloning was performed using LRG2.1 (Addgene, Cat. #108098), LRG (Addgene, Cat. #65656), or custom-cloned LR-Rluc-P2A-GFP vector backbones. ..

    Article Title: Detecting Methylation Changes Induced by Prime Editing.
    Article Snippet: .. Backbone plasmids used for pegRNA and sgRNA cloning are available from Addgene. ..

    Article Title: Zinc-finger proteins with a co-opted capsid domain anchor nucleosomes over transposon sequences
    Article Snippet: To establish a HAP1 cell line with its endogenous ZNF24 gene tagged with an FKBP12 F36V degron, the cells were first sorted based on cellular sizes with FACSAria II (BD Biosciences) to enrich for haploid cells as previously described ( ). .. The repair template plasmid construction and sgRNA cloning were performed as previously described ( , ). pCRIS-PITChv2-BSD-dTAG (BRD4) was a gift from James Bradner & Behnam Nabet (Addgene plasmid # 91792 ; http://n2t.net/addgene:91792 ; RRID:Addgene_91792) and pX330-BbsI-PITCh was a gift from Peter Kaiser (Addgene plasmid # 127875 ; http://n2t.net/addgene:127875 ; RRID:Addgene_127875). .. The constructed pCRIS-PITChv2-BSD-dTAG (ZNF24) and pX330-BbsI-PITCh (ZNF24) were transfected to the sorted HAP1 cells with TransIT-LT1 (Mirus Bio, MIR 2306).

    Article Title: Selict-seq profiles genome-wide off-target effects in adenosine base editing.
    Article Snippet: HEK293T (ATCC, CRL-11268) and MCF7 (ATCC, HTB-22) cells were separately maintained in Dulbecco’s modified Eagle medium (DMEM) and Minimum Essential Medium (MEM) supplemented with 10% Fetal Bovine Serum (FBS) and 1% penicillin / streptomycin at 37 ◦C under 5% CO 2 . .. Plasmid construction and sgRNA cloning The ABE8e (TadA-8e V106W) expression plasmid (Addgene, #138495) and ABE7.10 expression plasmid (Addgene, #102919) were purchased and used for transfection. ..

    Plasmid Preparation:

    Article Title: Chronic lysosome damage boosts interferon responses to Palbociclib through a mitochondrial signalling axis
    Article Snippet: .. Where Gateway cloning was performed this was as per standard protocols using BP clonase II and LR clonase II (Invitrogen). sgRNA cloning into lentiGuide-puro vector was performed using restriction digestion as per the standard protocols available from Addgene. ..

    Article Title: Med12 cooperates with multiple differentiation signals to facilitate efficient lineage transitions in embryonic stem cells.
    Article Snippet: .. Cell lines carrying PiggyBac transgenes were kept under appropriate selection to prevent transgene repression over passaging. sgRNA cloning and generation of single-gene mutants For mutagenesis of individual genes via CRISPR/Cas9, gene targeting sgRNAs (Table S7) were cloned into pX459 (Addgene plasmid #48139) using BbsI (NEB) overhangs following Ran et al., 2013 (Ran et al., 2013). ..

    Article Title: Residual Breast Cancer Cells Co-opt SOX5-driven Endochondral Ossification to Maintain Dormancy
    Article Snippet: LentiV_Cas9_puro (Addgene, Cat. #108100) was utilized to create Cas9-expressing MTB/TAN -derived primary tumor cells. .. For CRISPR-Cas9 studies, sgRNA cloning was performed using LRG2.1 (Addgene, Cat. #108098), LRG (Addgene, Cat. #65656), or custom-cloned LR-Rluc-P2A-GFP vector backbones. ..

    Article Title: Zinc-finger proteins with a co-opted capsid domain anchor nucleosomes over transposon sequences
    Article Snippet: To establish a HAP1 cell line with its endogenous ZNF24 gene tagged with an FKBP12 F36V degron, the cells were first sorted based on cellular sizes with FACSAria II (BD Biosciences) to enrich for haploid cells as previously described ( ). .. The repair template plasmid construction and sgRNA cloning were performed as previously described ( , ). pCRIS-PITChv2-BSD-dTAG (BRD4) was a gift from James Bradner & Behnam Nabet (Addgene plasmid # 91792 ; http://n2t.net/addgene:91792 ; RRID:Addgene_91792) and pX330-BbsI-PITCh was a gift from Peter Kaiser (Addgene plasmid # 127875 ; http://n2t.net/addgene:127875 ; RRID:Addgene_127875). .. The constructed pCRIS-PITChv2-BSD-dTAG (ZNF24) and pX330-BbsI-PITCh (ZNF24) were transfected to the sorted HAP1 cells with TransIT-LT1 (Mirus Bio, MIR 2306).

    Article Title: Selict-seq profiles genome-wide off-target effects in adenosine base editing.
    Article Snippet: HEK293T (ATCC, CRL-11268) and MCF7 (ATCC, HTB-22) cells were separately maintained in Dulbecco’s modified Eagle medium (DMEM) and Minimum Essential Medium (MEM) supplemented with 10% Fetal Bovine Serum (FBS) and 1% penicillin / streptomycin at 37 ◦C under 5% CO 2 . .. Plasmid construction and sgRNA cloning The ABE8e (TadA-8e V106W) expression plasmid (Addgene, #138495) and ABE7.10 expression plasmid (Addgene, #102919) were purchased and used for transfection. ..

    Selection:

    Article Title: Med12 cooperates with multiple differentiation signals to facilitate efficient lineage transitions in embryonic stem cells.
    Article Snippet: .. Cell lines carrying PiggyBac transgenes were kept under appropriate selection to prevent transgene repression over passaging. sgRNA cloning and generation of single-gene mutants For mutagenesis of individual genes via CRISPR/Cas9, gene targeting sgRNAs (Table S7) were cloned into pX459 (Addgene plasmid #48139) using BbsI (NEB) overhangs following Ran et al., 2013 (Ran et al., 2013). ..

    Passaging:

    Article Title: Med12 cooperates with multiple differentiation signals to facilitate efficient lineage transitions in embryonic stem cells.
    Article Snippet: .. Cell lines carrying PiggyBac transgenes were kept under appropriate selection to prevent transgene repression over passaging. sgRNA cloning and generation of single-gene mutants For mutagenesis of individual genes via CRISPR/Cas9, gene targeting sgRNAs (Table S7) were cloned into pX459 (Addgene plasmid #48139) using BbsI (NEB) overhangs following Ran et al., 2013 (Ran et al., 2013). ..

    Mutagenesis:

    Article Title: Med12 cooperates with multiple differentiation signals to facilitate efficient lineage transitions in embryonic stem cells.
    Article Snippet: .. Cell lines carrying PiggyBac transgenes were kept under appropriate selection to prevent transgene repression over passaging. sgRNA cloning and generation of single-gene mutants For mutagenesis of individual genes via CRISPR/Cas9, gene targeting sgRNAs (Table S7) were cloned into pX459 (Addgene plasmid #48139) using BbsI (NEB) overhangs following Ran et al., 2013 (Ran et al., 2013). ..

    CRISPR:

    Article Title: Med12 cooperates with multiple differentiation signals to facilitate efficient lineage transitions in embryonic stem cells.
    Article Snippet: .. Cell lines carrying PiggyBac transgenes were kept under appropriate selection to prevent transgene repression over passaging. sgRNA cloning and generation of single-gene mutants For mutagenesis of individual genes via CRISPR/Cas9, gene targeting sgRNAs (Table S7) were cloned into pX459 (Addgene plasmid #48139) using BbsI (NEB) overhangs following Ran et al., 2013 (Ran et al., 2013). ..

    Article Title: Residual Breast Cancer Cells Co-opt SOX5-driven Endochondral Ossification to Maintain Dormancy
    Article Snippet: LentiV_Cas9_puro (Addgene, Cat. #108100) was utilized to create Cas9-expressing MTB/TAN -derived primary tumor cells. .. For CRISPR-Cas9 studies, sgRNA cloning was performed using LRG2.1 (Addgene, Cat. #108098), LRG (Addgene, Cat. #65656), or custom-cloned LR-Rluc-P2A-GFP vector backbones. ..

    Clone Assay:

    Article Title: Med12 cooperates with multiple differentiation signals to facilitate efficient lineage transitions in embryonic stem cells.
    Article Snippet: .. Cell lines carrying PiggyBac transgenes were kept under appropriate selection to prevent transgene repression over passaging. sgRNA cloning and generation of single-gene mutants For mutagenesis of individual genes via CRISPR/Cas9, gene targeting sgRNAs (Table S7) were cloned into pX459 (Addgene plasmid #48139) using BbsI (NEB) overhangs following Ran et al., 2013 (Ran et al., 2013). ..

    other:

    Article Title: Loss of BPTF restores estrogen response and suppresses metastasis of mammary tumors.
    Article Snippet: Graphs were generated using GraphPad Prism software.

    Expressing:

    Article Title: Selict-seq profiles genome-wide off-target effects in adenosine base editing.
    Article Snippet: HEK293T (ATCC, CRL-11268) and MCF7 (ATCC, HTB-22) cells were separately maintained in Dulbecco’s modified Eagle medium (DMEM) and Minimum Essential Medium (MEM) supplemented with 10% Fetal Bovine Serum (FBS) and 1% penicillin / streptomycin at 37 ◦C under 5% CO 2 . .. Plasmid construction and sgRNA cloning The ABE8e (TadA-8e V106W) expression plasmid (Addgene, #138495) and ABE7.10 expression plasmid (Addgene, #102919) were purchased and used for transfection. ..

    Transfection:

    Article Title: Selict-seq profiles genome-wide off-target effects in adenosine base editing.
    Article Snippet: HEK293T (ATCC, CRL-11268) and MCF7 (ATCC, HTB-22) cells were separately maintained in Dulbecco’s modified Eagle medium (DMEM) and Minimum Essential Medium (MEM) supplemented with 10% Fetal Bovine Serum (FBS) and 1% penicillin / streptomycin at 37 ◦C under 5% CO 2 . .. Plasmid construction and sgRNA cloning The ABE8e (TadA-8e V106W) expression plasmid (Addgene, #138495) and ABE7.10 expression plasmid (Addgene, #102919) were purchased and used for transfection. ..



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    aTPST2 has an enhancer-like function. A The results of dual-luciferase reporter system. The y-axis shows the construction of luciferase reporter plasmids and LNAs. Three experimental replicates were performed. The error bars represent SEM. One-tailed Student’s t-test was used for the statistical analysis, different letters among a, b, c, and d indicate significant difference ( p < 0.01). B Illustration of aTPST2 deletion mutants. Four different regions are deleted individually, which results in 4 types of aTPST2 mutants: aTPST2 -Δ1, aTPST2 -Δ2, aTPST2 -Δ3, and aTPST2 -Δ4. C Silver staining result following RNA pull-down assay showing the proteins bound to aTPST2 (right) and reverse aTPST2 ( aTPST2 -rev, middle). Only one pull-down assay for mass spectrometry analysis was performed with 3,379 pig 8-cell embryos. One specific band in the right lane was analyzed through mass spectrometry and confirmed as MED8. L, protein ladder. KD, kilodalton. D RT-PCR and western blotting results following RNA pull-down assay using porcine 8-cell embryos. Three experimental replicates were performed. KD, kilodalton. α-, anti-. E Top, aTPST2 and MED8 are stained simultaneously by RNA-FISH combined with immunofluorescence in porcine 8-cell embryos. One nucleus marked by white square is magnified in the right lane. Bottom, line scans of the relative intensity of fluorescence signals indicated by the white dotted line in top panel. Scale bar, 50 μm. F Results of RNA electrophoretic mobility shift assays (REMSA) assays. Three biological replicates were performed. α-, anti-. G Co-immunoprecipitation (IP) followed by RT-PCR and western blotting using porcine embryonic fibroblast (PEF) cells expressing HA-tagged MS2P and <t>MS2-labelled</t> aTPST2 . Three biological replicates were performed. α-, anti-. IP, antibodies used for IP. KD, kilodalton
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    Image Search Results


    aTPST2 has an enhancer-like function. A The results of dual-luciferase reporter system. The y-axis shows the construction of luciferase reporter plasmids and LNAs. Three experimental replicates were performed. The error bars represent SEM. One-tailed Student’s t-test was used for the statistical analysis, different letters among a, b, c, and d indicate significant difference ( p < 0.01). B Illustration of aTPST2 deletion mutants. Four different regions are deleted individually, which results in 4 types of aTPST2 mutants: aTPST2 -Δ1, aTPST2 -Δ2, aTPST2 -Δ3, and aTPST2 -Δ4. C Silver staining result following RNA pull-down assay showing the proteins bound to aTPST2 (right) and reverse aTPST2 ( aTPST2 -rev, middle). Only one pull-down assay for mass spectrometry analysis was performed with 3,379 pig 8-cell embryos. One specific band in the right lane was analyzed through mass spectrometry and confirmed as MED8. L, protein ladder. KD, kilodalton. D RT-PCR and western blotting results following RNA pull-down assay using porcine 8-cell embryos. Three experimental replicates were performed. KD, kilodalton. α-, anti-. E Top, aTPST2 and MED8 are stained simultaneously by RNA-FISH combined with immunofluorescence in porcine 8-cell embryos. One nucleus marked by white square is magnified in the right lane. Bottom, line scans of the relative intensity of fluorescence signals indicated by the white dotted line in top panel. Scale bar, 50 μm. F Results of RNA electrophoretic mobility shift assays (REMSA) assays. Three biological replicates were performed. α-, anti-. G Co-immunoprecipitation (IP) followed by RT-PCR and western blotting using porcine embryonic fibroblast (PEF) cells expressing HA-tagged MS2P and MS2-labelled aTPST2 . Three biological replicates were performed. α-, anti-. IP, antibodies used for IP. KD, kilodalton

    Journal: BMC Biology

    Article Title: TPST2-mediated tyrosine sulfation orchestrates porcine preimplantation development

    doi: 10.1186/s12915-026-02525-7

    Figure Lengend Snippet: aTPST2 has an enhancer-like function. A The results of dual-luciferase reporter system. The y-axis shows the construction of luciferase reporter plasmids and LNAs. Three experimental replicates were performed. The error bars represent SEM. One-tailed Student’s t-test was used for the statistical analysis, different letters among a, b, c, and d indicate significant difference ( p < 0.01). B Illustration of aTPST2 deletion mutants. Four different regions are deleted individually, which results in 4 types of aTPST2 mutants: aTPST2 -Δ1, aTPST2 -Δ2, aTPST2 -Δ3, and aTPST2 -Δ4. C Silver staining result following RNA pull-down assay showing the proteins bound to aTPST2 (right) and reverse aTPST2 ( aTPST2 -rev, middle). Only one pull-down assay for mass spectrometry analysis was performed with 3,379 pig 8-cell embryos. One specific band in the right lane was analyzed through mass spectrometry and confirmed as MED8. L, protein ladder. KD, kilodalton. D RT-PCR and western blotting results following RNA pull-down assay using porcine 8-cell embryos. Three experimental replicates were performed. KD, kilodalton. α-, anti-. E Top, aTPST2 and MED8 are stained simultaneously by RNA-FISH combined with immunofluorescence in porcine 8-cell embryos. One nucleus marked by white square is magnified in the right lane. Bottom, line scans of the relative intensity of fluorescence signals indicated by the white dotted line in top panel. Scale bar, 50 μm. F Results of RNA electrophoretic mobility shift assays (REMSA) assays. Three biological replicates were performed. α-, anti-. G Co-immunoprecipitation (IP) followed by RT-PCR and western blotting using porcine embryonic fibroblast (PEF) cells expressing HA-tagged MS2P and MS2-labelled aTPST2 . Three biological replicates were performed. α-, anti-. IP, antibodies used for IP. KD, kilodalton

    Article Snippet: For the preparation of the sgRNAs targeting promoters of aTPST2 , the spacer sequences were designed on the website of CRISPR RGEN Tools ( http://www.rgenome.net/cas-designer/ ), and the DNA fragments containing T7 promoter and MS2-labbled sgRNAs were generated from the plasmid sgRNA (MS2) (Addgene, 61,424).

    Techniques: Luciferase, One-tailed Test, Silver Staining, Pull Down Assay, Mass Spectrometry, Reverse Transcription Polymerase Chain Reaction, Western Blot, Staining, Immunofluorescence, Fluorescence, Electrophoretic Mobility Shift Assay, Immunoprecipitation, Expressing